SCIENTIFIC PROGRAM

  • 08:30

Registration and Welcome Coffee

  • 09:30
  • Jean Armengaud
  • Cellier Benoit XII

Opening and Welcome

Perspectives on the impact and future of metaproteomics for microbiome research
  • 09:45
  • Robert Hettich
  • Cellier Benoit XII

Perspectives on the impact and future of metaproteomics for microbiome research

Inaugural talk

  • 10:30 - 12:30
  • Chair: Uzzau Sergio
  • Cellier Benoit XII

Session 1: Metaproteomics in Health and Disease

10:30 "Fecal metaproteomics enables functional characterization of remission in patients with inflammatory bowel disease"
Wolf Maximilian - University of Bielefeld, Germany

10:45 "Ultra-fast metaproteomics profiling of type-2-diabetes oral microbiome using PASEF DIA"
Samodova Diana - University of Copenhagen, Denmark

11:00 "Evaluation of the effect of 93 chemicals on the Simplified Human Gut Microbiota Model (SIHUMIx) using a high-throughput in vitro screening and metaproteomics"
Castañeda-Monsalve Victor - Helmholtz Centre for Environmental Research, Germany

11:15 "Microbiome-derived metabolites as biomarkers for anal cancer screening"
Saenz Johan - University of Hohenheim, Germany

11:30 "Getting more insights in the respiratory microbiota of cystic fibrosis patients"
Hachemi Hamid - CEA - ProGénoMix Platform, France

11:45 "Metaproteomics and 16S rRNA analysis for Study of Gut Microbiota Establishment in Infants with Cystic Fibrosis"
Monteoliva Lucia - Universidad Complutense de Madrid, Spain

12:00 "Market outlook for metaproteomics, a feedback from Phylogene"
Metton Isabelle - Phylogene, France

  • 12:30 - 14:00

Lunch Break

Digging out the major plant-microbe interactions occurring in soil
  • 14:00
  • Ian Lidbury
  • Cellier Benoit XII

Digging out the major plant-microbe interactions occurring in soil

Keynote speaker

  • 14:45 - 15:40
  • Chair: Matallana-Surget Sabine and Heldal Hagen Live
  • Cellier Benoit XII

Session 2: Environmental Metaproteomics

14:45 "What do we gain from scaled-down environmental metaproteomes? An example in a critical marine microbiome"
Held Noelle - ETH Zurich, Switzerland

15:00 "Data Independent Acquisition Metaproteomics of a Natural Marine System Reveal Peptide Predictors of Algal Blooms"
Timmins-Schiffman Emma - University of Washington, USA

15:15 "Effect of diet on the gut microbiota of the freshwater sentinel Gammarus fossarum "
Dumas Thibaut - CEA - ProGénoMix Platform, France;

15:30 "Dynamics of hyperhalophilic microbial communities submitted to long-term cyclic disturbances: a metagenomic and metaproteomic case study."
Bosch Rafael - Universitat de les Illes Balears (UIB), Spain

  • 15:40 - 16:10
  • Paneterie

Coffee Break

  • 16:10 - 17:05
  • Chair: Matallana-Surget Sabine and Heldal Hagen Live
  • Cellier Benoit XII

Session 2: Environmental Metaproteomics

16:10 "Polysaccharide-degrading potential of microbiomes in agricultural field denitrification beds"
Arntzen Magnus - Norwegian University of Life Sciences, Norway

16:30 "The power of teamwork - Investigating the nutritional cycle of a symbiotic microbial community with tandem mass spectrometry"
D'Angelo Grace - Max Planck Institute of Marine Microbiology, Germany

16:40 "Unraveling Functionality and Taxonomic Shifts of a Hydrocarbon-Degrading Bacterial Consortia using Metaproteomics"
Al Haid Ali - University of Sheffield, England

16:50 "Evaluating the benefit of dia-PASEF approaches and sample-specific database strategies for metaproteomics of very complex microbiomes"
Schmit, Pierre-Olivier - Bruker, France

  • 17:05
  • Paneterie

Poster Session

Host-Microbiome Interactions in Early Life:  Focus on Gut Fungi
  • 09:00
  • Veronika Pettersen
  • Cellier Benoit XII

Host-Microbiome Interactions in Early Life: Focus on Gut Fungi

Keynote Speaker

  • 09:45 - 10:45
  • Chair: Seifert Jana
  • Cellier Benoit XII

Session 3: New Methods in Metaproteomics

09:45 "Expanding the Characterization of Microbial Ecosystems using DIA-PASEF Metaproteomics"
Gomez Varela David - University of Vienna, Austria

10:05 "Optimized gene annotation for accurate protein sequence database construction in metaproteomics and data-independent acquisition metaproteomics"
Qiao Liang - Fudan University, China

10:20 "The first ground truth dataset for the assessment of differential expression analyses in metaproteomics and more"
Kunath Benoit - University of Luxembourg, Luxembourg

10:35 "Investigating rumen microbiome functions through seaweed-based nutritional manipulation"
Ferrillo Alessandra - Norwegian University of Life Sciences, Norway

  • 10:45 - 11:15
  • Paneterie

Coffee Break

  • 11:15 - 12:30
  • Chair: Seifert Jana
  • Cellier Benoit XII

Session 3: New Methods in Metaproteomics

11:15 "Revealing Protein-Level Functional Redundancy in the Human Gut Microbiome using Ultra-deep Metaproteomics"
Li Leyuan - University of Ottawa, Canada

11:30 "Unravelling metabolic heterogeneity and cross-feeding using metaproteomics and stable isotope labelling"
Kamrad Stephan - University of Cambridge, England

11:45 "Identification of newly synthesized proteins in microbial communities using BONCAT and click chemistry"
Hellwig Patrick - Otto von Guericke University Magdeburg, Germany

12:00 "Constructing a peptide library for faster human gut metaproteomics research"
Sun Zhongzhi - University of Ottawa, Canada

12:10 "MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database"
Cheng Kai - University of Ottawa, Canada

12:20 "Comparison of methods for processing fecal protein extracts on a multiwell plate for metaproteomic analysis"
Deledda Maria Antonietta - University of Sassari, Italy

  • 12:30 - 14:00

Lunch Break

  • 14:00 - 15:20
  • Cellier Benoit XII

"CAMPIs" Session

14:00 “CAMPIs: vision and objectives”
Robert Hettich - Oak Ridge National Laboratory, USA

14:10 “CAMPI2: Sample preservation”
Sergio Uzzau - University of Sassari, Italy

14:30 “CAMPI3: Extracting functional information”
Jagtap Pratik - University of Minnesota, USA

14:50 General discussion: “Improving methodologies & next CAMPI editions”

  • 15:20 - 16:30
  • Cellier Benoit XII

"Grand Challenge" Session

15:20 “Grand challenge: a prospectus”
Figeys Daniel - University of Ottawa, Canada

15:50 Round Table: “Opportunities for the community”
Figeys Daniel, Armengaud Jean, Hettich Robert
 

  • 16:30 - 17:00
  • Paneterie

Coffee Break

  • 17:00 - 18:00
  • Cellier Benoit XII

EuPA Metaproteomics Initiative Session

17:00 "EuPA MetaP Initiative: Structuring the community"
Van den Bossche Tim - Ghent University, Belgium
Kunath Benoit - University of Luxembourg, Luxembourg

 

IMS Dinner
  • 20:30

IMS Dinner

  • 09:00 - 10:35
  • Chair: Muth Thilo and Mesuere Bart
  • Cellier Benoit XII

Session 5: Integrative Multiomics and Bioinformatics

09:00 "An approach to integrate metagenomics, metatranscriptomics and metaproteomics data found in public resources"
Vizcaino Juan Antonio - EMBL-EBI, England

09:20 "The Peptonizer2000: Probability based taxonomic profiling of microbiome samples using PepGM and Unipept"
Holstein Tanja - Bundesanstalt für Materialforschung - und Prüfung, Germany

09:35 "Mistle: Metaproteomic index and spectral library search engine"
Nowatzky Yannek - Bundesanstalt für Materialforschung - und Prüfung, Germany

09:50 "Accessible metaproteomic database construction using iterative homology searching with CHEW"
Kleikamp Hugo - Aalborg University, Denmark

10:05 "Integrative meta-omics in Galaxy and beyond"
Schiml Valerie - Norwegian University of Life Sciences, Norway

10:20 "Unipept Desktop 2.0: construction of targeted reference protein databases for proteogenomics analyses"
Verschaffelt Pieter - Ghent University, Belgium

  • 10:35 - 11:05
  • Paneterie

Coffee Break

  • 11:05 - 11:30
  • Chair: Muth Thilo and Mesuere Bart
  • Cellier Benoit XII

Session 5: Integrative Multiomics and Bioinformatics

11:05 "Bioinformatic Workflow for Metaproteomic Analysis of Host-Microbe Dynamics in Clinical Samples"
Jagtap Pratik - University of Minnesota, USA

11:20 "PathwayPilot: A User-Friendly Tool for Visualizing Metabolic Pathways and Navigating the KEGG Database"
Vande Moortele Tibo - Ghent University, Belgium

  • 11:30 - 12:30
  • Cellier Benoit XII

Round Table - Metadata standards and Repository

Van den Bossche Tim, Heyer Robert, Vizcaino Juan-Antonio

  • 12:30 - 14:00

Lunch Break

  • 14:00 - 15:10
  • Chair: Jehmlich Nico
  • Cellier Benoit XII

Session 5 - Trends in Metaproteomics

14:00 "Experimental validation that human microbiome phages use alternative genetic coding"
Peters Samantha - Oak Ridge National Laboratory, USA

14:15 "Fecal sample collection and room-temperature storage using swabs with preservation medium enables deep characterization of the human gut metaproteome"
Tanca Alessandro - University of Sassari, Italy

14:30 "A prospectus for tailoring metaproteomics database using MS/MS proteotyping"
Armengaud Jean - Commissariat à l'énergie atomique et aux énergies alternatives, France 

14:45 "Untargeted data-independent acquisition for metaproteomics of complex microbial samples"
Suomi Tomi - University of Turku, Finland

14:55 "Exploring precision prebiotics to target the gut microbiome in Alzheimer"s disease"
Qin Hongye - University of Ottawa, Canada

Metaproteomic applications in clinical research and drug development
  • 15:15
  • Daniel Figeys
  • Cellier Benoit XII

Metaproteomic applications in clinical research and drug development

Closing Talk & Perspective for the field

16:15 Concluding discussion and Perspectives

  • 17:00 - 18:30

End of the Symposium - Visit of the Pope's Palace

Event Speakers

Robert Hettich

Robert Hettich

Oak Ridge National Laboratory
Ian Lidbury

Ian Lidbury

University of Sheffield
Veronika Pettersen

Veronika Pettersen

UiT The Artic University Of Norway
    Daniel Figeys

    Daniel Figeys

    University of Ottawa

    Registration Fees

    Student

    250 €

    /

    • EARLY BIRD

    Regular

    300 €

    /

    • EARLY BIRD

    Industry

    600 €

    /

    • EARLY BIRD

    After March 27th

    /

    • Student 300 €
    • Regular 350 €
    • Industry 700 €

    Guidelines for abstract submission:

    1. Abstracts for oral and poster presentations must be written in English and not exceed 500 words (excluding authors' names and affiliations).
    2. Abstracts should be as informative as possible and structured sensibly (e.g., background and aims; methods; results; conclusions).
    3. Abstract should not contain any tables, figures, or references.
    4. For a better selection of the abstract, please mention if you would like to submit an abstract for an oral or a poster presentation as well as the most relevant topic for your abstract

    TEMPLATE

    Abstract Title [150 words]
    Authors' Names and Affiliations

    Preferred presentation method: Oral / Poster
    Topic: Metaproteomics in Health and Disease / Environmental Metaproteomics / New Methods and Trends in Metaproteomics / Modelling and Managing Microbial Communities / Integrative Multiomics and Bioinformatics / Metaproteomics of complex/ technical habitats and Eukaryotes
    Main Text [500 words max / No Figures / No References]

    Organisers

    This year’s International Metaproteomics Symposium is hosted and organised by Dr. Jean Armengaud and Dr. Lucia Grenga from CEA (Commissariat à l’Energie Atomique et aux Energies Alternatives) with the support of the Scientific Committee including:

     

    Dirk Benndorf

    Dirk Benndorf

    Anhalt University of Applied Sciences
      Daniel Figeys

      Daniel Figeys

      University of Ottawa
      Robert Hettich

      Robert Hettich

      Oak Ridge National Laboratory
      Sabine Matallana-Surget

      Sabine Matallana-Surget

      University of Stirling
        Phil Pope

        Phil Pope

        Norwegian University of Life Sciences
          Sergio Uzzau

          Sergio Uzzau

          University of Sassari
          Paul Wilmes

          Paul Wilmes

          Luxembourg Centre for Systems Biomedicine

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