SCIENTIFIC PROGRAM
- 08:30
Registration and Welcome Coffee
- 09:30
- Jean Armengaud
- Cellier Benoit XII
Opening and Welcome
- 09:45
- Robert Hettich
- Cellier Benoit XII
Perspectives on the impact and future of metaproteomics for microbiome research
Inaugural talk
- 10:30 - 12:30
- Chair: Uzzau Sergio
- Cellier Benoit XII
Session 1: Metaproteomics in Health and Disease
10:30 "Fecal metaproteomics enables functional characterization of remission in patients with inflammatory bowel disease"
Wolf Maximilian - University of Bielefeld, Germany
10:45 "Ultra-fast metaproteomics profiling of type-2-diabetes oral microbiome using PASEF DIA"
Samodova Diana - University of Copenhagen, Denmark
11:00 "Evaluation of the effect of 93 chemicals on the Simplified Human Gut Microbiota Model (SIHUMIx) using a high-throughput in vitro screening and metaproteomics"
Castañeda-Monsalve Victor - Helmholtz Centre for Environmental Research, Germany
11:15 "Microbiome-derived metabolites as biomarkers for anal cancer screening"
Saenz Johan - University of Hohenheim, Germany
11:30 "Getting more insights in the respiratory microbiota of cystic fibrosis patients"
Hachemi Hamid - CEA - ProGénoMix Platform, France
11:45 "Metaproteomics and 16S rRNA analysis for Study of Gut Microbiota Establishment in Infants with Cystic Fibrosis"
Monteoliva Lucia - Universidad Complutense de Madrid, Spain
12:00 "Market outlook for metaproteomics, a feedback from Phylogene"
Metton Isabelle - Phylogene, France
- 12:30 - 14:00
Lunch Break
- 14:00
- Ian Lidbury
- Cellier Benoit XII
Digging out the major plant-microbe interactions occurring in soil
Keynote speaker
- 14:45 - 15:40
- Chair: Matallana-Surget Sabine and Heldal Hagen Live
- Cellier Benoit XII
Session 2: Environmental Metaproteomics
14:45 "What do we gain from scaled-down environmental metaproteomes? An example in a critical marine microbiome"
Held Noelle - ETH Zurich, Switzerland
15:00 "Data Independent Acquisition Metaproteomics of a Natural Marine System Reveal Peptide Predictors of Algal Blooms"
Timmins-Schiffman Emma - University of Washington, USA
15:15 "Effect of diet on the gut microbiota of the freshwater sentinel Gammarus fossarum "
Dumas Thibaut - CEA - ProGénoMix Platform, France;
15:30 "Dynamics of hyperhalophilic microbial communities submitted to long-term cyclic disturbances: a metagenomic and metaproteomic case study."
Bosch Rafael - Universitat de les Illes Balears (UIB), Spain
- 15:40 - 16:10
- Paneterie
Coffee Break
- 16:10 - 17:05
- Chair: Matallana-Surget Sabine and Heldal Hagen Live
- Cellier Benoit XII
Session 2: Environmental Metaproteomics
16:10 "Polysaccharide-degrading potential of microbiomes in agricultural field denitrification beds"
Arntzen Magnus - Norwegian University of Life Sciences, Norway
16:30 "The power of teamwork - Investigating the nutritional cycle of a symbiotic microbial community with tandem mass spectrometry"
D'Angelo Grace - Max Planck Institute of Marine Microbiology, Germany
16:40 "Unraveling Functionality and Taxonomic Shifts of a Hydrocarbon-Degrading Bacterial Consortia using Metaproteomics"
Al Haid Ali - University of Sheffield, England
16:50 "Evaluating the benefit of dia-PASEF approaches and sample-specific database strategies for metaproteomics of very complex microbiomes"
Schmit, Pierre-Olivier - Bruker, France
- 17:05
- Paneterie
Poster Session
- 09:00
- Veronika Pettersen
- Cellier Benoit XII
Host-Microbiome Interactions in Early Life: Focus on Gut Fungi
Keynote Speaker
- 09:45 - 10:45
- Chair: Seifert Jana
- Cellier Benoit XII
Session 3: New Methods in Metaproteomics
09:45 "Expanding the Characterization of Microbial Ecosystems using DIA-PASEF Metaproteomics"
Gomez Varela David - University of Vienna, Austria
10:05 "Optimized gene annotation for accurate protein sequence database construction in metaproteomics and data-independent acquisition metaproteomics"
Qiao Liang - Fudan University, China
10:20 "The first ground truth dataset for the assessment of differential expression analyses in metaproteomics and more"
Kunath Benoit - University of Luxembourg, Luxembourg
10:35 "Investigating rumen microbiome functions through seaweed-based nutritional manipulation"
Ferrillo Alessandra - Norwegian University of Life Sciences, Norway
- 10:45 - 11:15
- Paneterie
Coffee Break
- 11:15 - 12:30
- Chair: Seifert Jana
- Cellier Benoit XII
Session 3: New Methods in Metaproteomics
11:15 "Revealing Protein-Level Functional Redundancy in the Human Gut Microbiome using Ultra-deep Metaproteomics"
Li Leyuan - University of Ottawa, Canada
11:30 "Unravelling metabolic heterogeneity and cross-feeding using metaproteomics and stable isotope labelling"
Kamrad Stephan - University of Cambridge, England
11:45 "Identification of newly synthesized proteins in microbial communities using BONCAT and click chemistry"
Hellwig Patrick - Otto von Guericke University Magdeburg, Germany
12:00 "Constructing a peptide library for faster human gut metaproteomics research"
Sun Zhongzhi - University of Ottawa, Canada
12:10 "MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database"
Cheng Kai - University of Ottawa, Canada
12:20 "Comparison of methods for processing fecal protein extracts on a multiwell plate for metaproteomic analysis"
Deledda Maria Antonietta - University of Sassari, Italy
- 12:30 - 14:00
Lunch Break
- 14:00 - 15:20
- Cellier Benoit XII
"CAMPIs" Session
14:00 “CAMPIs: vision and objectives”
Robert Hettich - Oak Ridge National Laboratory, USA
14:10 “CAMPI2: Sample preservation”
Sergio Uzzau - University of Sassari, Italy
14:30 “CAMPI3: Extracting functional information”
Jagtap Pratik - University of Minnesota, USA
14:50 General discussion: “Improving methodologies & next CAMPI editions”
- 15:20 - 16:30
- Cellier Benoit XII
"Grand Challenge" Session
15:20 “Grand challenge: a prospectus”
Figeys Daniel - University of Ottawa, Canada
15:50 Round Table: “Opportunities for the community”
Figeys Daniel,
Armengaud Jean, Hettich Robert
- 16:30 - 17:00
- Paneterie
Coffee Break
- 17:00 - 18:00
- Cellier Benoit XII
EuPA Metaproteomics Initiative Session
17:00 "EuPA MetaP Initiative: Structuring the community"
Van den Bossche Tim - Ghent University, Belgium
Kunath Benoit - University of Luxembourg, Luxembourg
- 20:30
IMS Dinner
- 09:00 - 10:35
- Chair: Muth Thilo and Mesuere Bart
- Cellier Benoit XII
Session 5: Integrative Multiomics and Bioinformatics
09:00 "An approach to integrate metagenomics, metatranscriptomics and metaproteomics data found in public resources"
Vizcaino Juan Antonio - EMBL-EBI, England
09:20 "The Peptonizer2000: Probability based taxonomic profiling of microbiome samples using PepGM and Unipept"
Holstein Tanja - Bundesanstalt für Materialforschung - und Prüfung, Germany
09:35 "Mistle: Metaproteomic index and spectral library search engine"
Nowatzky Yannek - Bundesanstalt für Materialforschung - und Prüfung, Germany
09:50 "Accessible metaproteomic database construction using iterative homology searching with CHEW"
Kleikamp Hugo - Aalborg University, Denmark
10:05 "Integrative meta-omics in Galaxy and beyond"
Schiml Valerie - Norwegian University of Life Sciences, Norway
10:20 "Unipept Desktop 2.0: construction of targeted reference protein databases for proteogenomics analyses"
Verschaffelt Pieter - Ghent University, Belgium
- 10:35 - 11:05
- Paneterie
Coffee Break
- 11:05 - 11:30
- Chair: Muth Thilo and Mesuere Bart
- Cellier Benoit XII
Session 5: Integrative Multiomics and Bioinformatics
11:05 "Bioinformatic Workflow for Metaproteomic Analysis of Host-Microbe Dynamics in Clinical Samples"
Jagtap Pratik - University of Minnesota, USA
11:20 "PathwayPilot: A User-Friendly Tool for Visualizing Metabolic Pathways and Navigating the KEGG Database"
Vande Moortele Tibo - Ghent University, Belgium
- 11:30 - 12:30
- Cellier Benoit XII
Round Table - Metadata standards and Repository
Van den Bossche Tim, Heyer Robert, Vizcaino Juan-Antonio
- 12:30 - 14:00
Lunch Break
- 14:00 - 15:10
- Chair: Jehmlich Nico
- Cellier Benoit XII
Session 5 - Trends in Metaproteomics
14:00 "Experimental validation that human microbiome phages use alternative genetic coding"
Peters Samantha - Oak Ridge National Laboratory, USA
14:15 "Fecal sample collection and room-temperature storage using swabs with preservation medium enables deep characterization of the human gut metaproteome"
Tanca Alessandro - University of Sassari, Italy
14:30 "A prospectus for tailoring metaproteomics database using MS/MS proteotyping"
Armengaud Jean - Commissariat à l'énergie atomique et aux énergies alternatives, France
14:45 "Untargeted data-independent acquisition for metaproteomics of complex microbial samples"
Suomi Tomi - University of Turku, Finland
14:55 "Exploring precision prebiotics to target the gut microbiome in Alzheimer"s disease"
Qin Hongye - University of Ottawa, Canada
- 15:15
- Daniel Figeys
- Cellier Benoit XII
Metaproteomic applications in clinical research and drug development
Closing Talk & Perspective for the field
16:15 Concluding discussion and Perspectives
- 17:00 - 18:30
End of the Symposium - Visit of the Pope's Palace
Event Speakers
Robert Hettich
Oak Ridge National Laboratory
Ian Lidbury
University of Sheffield
Veronika Pettersen
UiT The Artic University Of Norway
Daniel Figeys
University of Ottawa
Guidelines for abstract submission:
1. Abstracts for oral and poster presentations must be written in English and not exceed 500 words (excluding authors' names and affiliations).
2. Abstracts should be as informative as possible and structured sensibly (e.g., background and aims; methods; results; conclusions).
3. Abstract should not contain any tables, figures, or references.
4. For a better selection of the abstract, please mention if you would like to submit an abstract for an oral or a poster presentation as well as the most relevant topic for your abstract
TEMPLATE
Abstract Title [150 words]
Authors' Names and Affiliations
Preferred presentation method: Oral / Poster
Topic: Metaproteomics in Health and Disease / Environmental Metaproteomics / New Methods and Trends in Metaproteomics / Modelling and Managing Microbial Communities / Integrative Multiomics and Bioinformatics / Metaproteomics of complex/ technical habitats and Eukaryotes
Main Text [500 words max / No Figures / No References]
Organisers
This year’s International Metaproteomics Symposium is hosted and organised by Dr. Jean Armengaud and Dr. Lucia Grenga from CEA (Commissariat à l’Energie Atomique et aux Energies Alternatives) with the support of the Scientific Committee including:
